mm16To256: SLiM method mm16To256
In rdinnager/slimrlang: Write SLiM Population Genetics Simulation Scripts in R

Description Usage Arguments Details Value Copyright Author(s)

Documentation for SLiM function mm16To256, which is a method of the SLiM class SLiMBuiltin. Note that the R function is a stub, it does not do anything in R (except bring up this documentation). It will only do anything useful when used inside a slim_block function further nested in a slim_script function call, where it will be translated into valid SLiM code as part of a full SLiM script.

1	mm16To256(mutationMatrix16)

mutationMatrix16

An object of type float. See details for description.

Returns a 64×4 mutation matrix that is functionally identical to the supplied 4×4 mutation matrix in mutationMatrix16. The mutation rate for each of the 64 trinucleotides will depend only upon the central nucleotide of the trinucleotide, and will be taken from the corresponding entry for the same nucleotide in mutationMatrix16. This function can be used to easily construct a simple trinucleotide-based mutation matrix which can then be modified so that specific trinucleotides sustain a mutation rate that does not depend only upon their central nucleotide. See the documentation for initializeGenomicElementType() in section 23.1 for further discussion of how these 64×4 mutation matrices are interpreted and used.

An object of type string or float or float or float or integer or float or integer.

This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016–2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/

Benjamin C Haller (bhaller@benhaller.com) and Philipp W Messer (messer@cornell.edu)

rdinnager/slimrlang documentation built on June 20, 2020, 8:17 p.m.