mmJukesCantor: SLiM method mmJukesCantor
In rdinnager/slimrlang: Write SLiM Population Genetics Simulation Scripts in R

Description Usage Arguments Details Value Copyright Author(s)

Documentation for SLiM function mmJukesCantor, which is a method of the SLiM class SLiMBuiltin. Note that the R function is a stub, it does not do anything in R (except bring up this documentation). It will only do anything useful when used inside a slim_block function further nested in a slim_script function call, where it will be translated into valid SLiM code as part of a full SLiM script.

1	mmJukesCantor(alpha)

alpha

An object of type float. Must be of length 1 (a singleton). See details for description.

Returns a mutation matrix representing a Jukes–Cantor (1969) model with mutation rate alpha to each possible alternative nucleotide at a site: This 2×2 matrix is suitable for use with initializeGenomicElementType(). Note that the actual mutation rate produced by this matrix is 3*alpha. 0 α α α α 0 α α α α 0 α α α α 0

An object of type string or float or float or float or integer or float or integer.

This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016–2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/

Benjamin C Haller (bhaller@benhaller.com) and Philipp W Messer (messer@cornell.edu)

rdinnager/slimrlang documentation built on June 20, 2020, 8:17 p.m.