mutationFrequencies: SLiM method mutationFrequencies
In rdinnager/slimrlang: Write SLiM Population Genetics Simulation Scripts in R

Description Usage Arguments Details Value Copyright Author(s)

Documentation for SLiM function mutationFrequencies, which is a method of the SLiM class SLiMSim. Note that the R function is a stub, it does not do anything in R (except bring up this documentation). It will only do anything useful when used inside a slim_block function further nested in a slim_script function call, where it will be translated into valid SLiM code as part of a full SLiM script.

1	mutationFrequencies(subpops, mutations)

`subpops`	An object of type null or Subpopulation object. See details for description.
`mutations`	An object of type null or Mutation object. The default value is `NULL`. See details for description.

Return a float vector with the frequencies of all of the Mutation objects passed in mutations, within the Subpopulation objects in subpops. The subpops argument is required, but you may pass NULL to get population- wide frequencies. If the optional mutations argument is NULL (the default), frequencies will be returned for all of the active Mutation objects in the simulation – the same Mutation objects, and in the same order, as would be returned by the mutations property of sim, in other words. See the - mutationCounts() method to obtain integer counts instead of float frequencies.

An object of type float.

This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016–2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/

Benjamin C Haller (bhaller@benhaller.com) and Philipp W Messer (messer@cornell.edu)

rdinnager/slimrlang documentation built on June 20, 2020, 8:17 p.m.