nucleotideFrequencies: SLiM method nucleotideFrequencies
In rdinnager/slimrlang: Write SLiM Population Genetics Simulation Scripts in R

Description Usage Arguments Details Value Copyright Author(s)

Documentation for SLiM function nucleotideFrequencies, which is a method of the SLiM class SLiMBuiltin. Note that the R function is a stub, it does not do anything in R (except bring up this documentation). It will only do anything useful when used inside a slim_block function further nested in a slim_script function call, where it will be translated into valid SLiM code as part of a full SLiM script.

1	nucleotideFrequencies(sequence)

sequence

An object of type integer or string. See details for description.

A convenience function that returns a float vector of length four, providing the frequencies of occurrences of A / C / G / T nucleotides, respectively, in the supplied nucleotide sequence. The parameter sequence may be a singleton string (e.g., "TATA"), a string vector of single characters (e.g., "T", "A", "T", "A"), or an integer vector (e.g., 3, 0, 3, 0), using SLiM’s standard code of A=0, C=1, G=2, T=3.

An object of type string or float or float or float or integer or float or integer.

This is documentation for a function in the SLiM software, and has been reproduced from the official manual, which can be found here: http://benhaller.com/slim/SLiM_Manual.pdf. This documentation is Copyright © 2016–2020 Philipp Messer. All rights reserved. More information about SLiM can be found on the official website: https://messerlab.org/slim/

Benjamin C Haller (bhaller@benhaller.com) and Philipp W Messer (messer@cornell.edu)

rdinnager/slimrlang documentation built on June 20, 2020, 8:17 p.m.