run_gage_for_feature: Run GAGE gene-set enrichment analysis for a given feature
In rdocking/amlpmpsupport: Support Functions for AML PMP RNA-Seq Stratification Manuscript
Description
Usage
Arguments
Value
View source: R/run_gage_for_feature.r
Description
Run GAGE gene-set enrichment analysis for a given feature
Usage
1
run_gage_for_feature(voom.hits, gsets, same.dir = TRUE)
Arguments
voom.hits
A data frame from the voom analysis, _unthresholded_
gsets
A list of gene sets, constructed by the geneIds function above
same.dir
same.dir argument for the 'gage' function
Value
pathways.merged A data frame containing up- and down-regulated pathways
rdocking/amlpmpsupport documentation built on Jan. 4, 2021, 7:09 a.m.
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Description Usage Arguments Value
View source: R/run_gage_for_feature.r
Description
Run GAGE gene-set enrichment analysis for a given feature
Usage
1 | run_gage_for_feature(voom.hits, gsets, same.dir = TRUE)
|
Arguments
voom.hits |
A data frame from the voom analysis, _unthresholded_ |
gsets |
A list of gene sets, constructed by the geneIds function above |
same.dir |
same.dir argument for the 'gage' function |
Value
pathways.merged A data frame containing up- and down-regulated pathways
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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