subset_genes_by_thresholds: Subset expression matrix by thresholds

In rdocking/amlpmpsupport: Support Functions for AML PMP RNA-Seq Stratification Manuscript

Description

Subset expression matrix by thresholds

Usage

subset_genes_by_thresholds(
  expr.mat,
  mean_tpm_threshold,
  cv_threshold,
  reference_means,
  reference_cvs
)

Arguments

expr.mat	A matrix of expression values
mean_tpm_threshold	The mean TPM threshold. Genes with values above this threshold will be retained
cv_threshold	The coefficient of variation threshold. Genes with values below this threshold will be retained
reference_means	The reference means, generated by the calculate_reference_set_mean_expression function
reference_cvs	The reference CVs, generated by the calculate_reference_set_coefficient_of_variation function

Value

expr.mat

rdocking/amlpmpsupport documentation built on Jan. 4, 2021, 7:09 a.m.