s_enteritidis_pt59: Salmonella Enteritidis PT59 outbreak
In reconhub/outbreaks: A Collection of Disease Outbreak Data
s_enteritidis_pt59 R Documentation
Salmonella Enteritidis PT59 outbreak
Description
This dataset covers a food-borne outbreak of Salmonella Enteritidis PT59
investigated by Public Health England. The data includes a distribution
network, and genetic clusters of bacteria isolated in contaminated
patients. The data is anonymised: identifiers of the food distribution
network have been hashed. The object s_enteritidis_pt59 is a list
containing:
Usage
s_enteritidis_pt59
Format
An object of class list of length 2.
Details
-
$graph: a data.frame containing with two columns
from and to specifying (directed) edges of the food
distribution network, alongside reported cases (terminal branches, or 'tips').
-
$cluster: a factor indicating the genetic cluster of
named tips.
Author(s)
Thomas Inns Thomas.Inns@phe.gov.uk, Philip Ashton, Tim
Dallman, Roberto Vivancos. Hashing and port to R by Thibaut Jombart.
Source
Multi-agency Salmonella Enteritidis PT59 Outbreak Control Team,
chaired by Public Health England
reconhub/outbreaks documentation built on Jan. 13, 2023, 10:48 p.m.
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| s_enteritidis_pt59 | R Documentation |
Salmonella Enteritidis PT59 outbreak
Description
This dataset covers a food-borne outbreak of Salmonella Enteritidis PT59
investigated by Public Health England. The data includes a distribution
network, and genetic clusters of bacteria isolated in contaminated
patients. The data is anonymised: identifiers of the food distribution
network have been hashed. The object s_enteritidis_pt59 is a list
containing:
Usage
s_enteritidis_pt59
Format
An object of class list of length 2.
Details
-
$graph: adata.framecontaining with two columnsfromandtospecifying (directed) edges of the food distribution network, alongside reported cases (terminal branches, or 'tips'). -
$cluster: afactorindicating the genetic cluster of named tips.
Author(s)
Thomas Inns Thomas.Inns@phe.gov.uk, Philip Ashton, Tim Dallman, Roberto Vivancos. Hashing and port to R by Thibaut Jombart.
Source
Multi-agency Salmonella Enteritidis PT59 Outbreak Control Team, chaired by Public Health England
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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