GSE70531_params: Parameters estimated for the MPRA data (GSE70531)

In redaq/atMPRA: Analysis Toolset for MPRA data

Description

Parameters estimated for the DNA and RNA (CONTROL) MPRA data (GSE70531) using the estimateMPRA function in this package.

Usage

data("GSE70531_params")

Format

The format is: num [1:231476] 1.86e-06 3.28e-06 3.22e-06 6.44e-06 2.03e-06 ...

Details

This list contains the dispersion function across the input and output replicates estimated using DESeq2, the function to generate the proportion of input counts across tags,the function to generate the estimated transfection efficiencies across the oligos, and the normalization factor for the input and output replicates generated by DESeq2.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70531

References

Ulirsch JC, Nandakumar SK, Wang L, Giani FC et al. Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits. Cell 2016 Jun 2;165(6):1530-1545. PMID: 27259154

Examples

data(GSE70531_params)

redaq/atMPRA documentation built on July 24, 2020, 2:40 a.m.