runExample: methylGSA shiny app

In reese3928/methylGSA: Gene Set Analysis Using the Outcome of Differential Methylation

Description

This is an interface for Bioconductor package methylGSA.

Usage

runExample(run = TRUE)

Arguments

run	Run the app or not. Default is TRUE

Value

The shiny app will be opened in a web browser.

Note

In order to run the app, the following R/Bioconductor packages needs to be installed properly: shinycssloaders, DT, ggplot2, IlluminaHumanMethylation450kanno.ilmn12.hg19 (if analyzing 450K array) IlluminaHumanMethylationEPICanno.ilm10b4.hg19 (if analyzing EPIC array)

Examples

## Please note: in this example, the argument run is set to be FALSE in 
## order to pass R CMD check. However, when using the app, users are 
## expected to launch the app by runExample()
runExample(FALSE)

reese3928/methylGSA documentation built on May 10, 2021, 10:41 p.m.