getDescription: Get gene set description
In reese3928/methylGSA: Gene Set Analysis Using the Outcome of Differential Methylation
Description
Usage
Arguments
Value
References
Examples
View source: R/getDescription.R
Description
This function gets description of gene sets.
Usage
1
getDescription(GSids, GS.type)
Arguments
GSids
A vector contains gene set IDs.
GS.type
A string. "GO", "KEGG", or "Reactome".
Value
A vector contains gene sets description.
References
Carlson M (2018). GO.db: A set of annotation maps describing
the entire Gene Ontology. R package version 3.6.0.
Yu G, Wang L, Han Y, He Q (2012). clusterProfiler: an R package
for comparing biological themes among gene clusters. OMICS: A Journal
of Integrative Biology, 16(5), 284-287.
Ligtenberg W (2017). reactome.db:
A set of annotation maps for reactome. R package version 1.62.0.
Examples
1
2
3
GSids = c("GO:0007389", "GO:0000978", "GO:0043062")
Description = getDescription(GSids, "GO")
head(Description)
reese3928/methylGSA documentation built on May 10, 2021, 10:41 p.m.
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Description Usage Arguments Value References Examples
View source: R/getDescription.R
Description
This function gets description of gene sets.
Usage
1 | getDescription(GSids, GS.type)
|
Arguments
GSids |
A vector contains gene set IDs. |
GS.type |
A string. "GO", "KEGG", or "Reactome". |
Value
A vector contains gene sets description.
References
Carlson M (2018). GO.db: A set of annotation maps describing the entire Gene Ontology. R package version 3.6.0.
Yu G, Wang L, Han Y, He Q (2012). clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology, 16(5), 284-287.
Ligtenberg W (2017). reactome.db: A set of annotation maps for reactome. R package version 1.62.0.
Examples
1 2 3 | GSids = c("GO:0007389", "GO:0000978", "GO:0043062")
Description = getDescription(GSids, "GO")
head(Description)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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