This repository houses code and data for the preprint manuscript "Reducing the threat of imported infectious disease outbreaks with active monitoring" by Nicholas Reich, Justin Lessler, Jay Varma, and Neil Vora. The manuscript is currently under review.
The repository is in the form of an R package, which can be installed using the following commands. You only need to run the first line if you don't already have the devtools
package installed.
install.packages('devtools')
devtools::install_github('reichlab/activemonitr')
Code to run the analyses for the manuscript can be found in: activemonitr/inst/analysis-code/
The manuscript itself is dynamically generated, reproducible, and can be found in: activemonitr/inst/manuscript/
The code for the Shiny app that accompanies the publication can be found in: activemonitr/inst/shiny/
Raw data used for the analyses can be found in: activemonitr/inst/raw-data/ The data used has been aggregated from several publications and a public data repository, including
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