plot_risk_uncertainty: Function for plotting risk and uncertainty of case escaping...

In reichlab/activemonitr: Evaluating public health active monitoring

Function for plotting risk and uncertainty of case escaping active monitoring

Description

Function for plotting risk and uncertainty of case escaping active monitoring

Usage

plot_risk_uncertainty(
  pstr_data,
  dist = c("gamma", "lnorm", "weibull"),
  nsamp = 1000,
  u = runif(nsamp, 1, 14),
  phi = c(1e-04, 0.001, 0.01),
  durations = 5:25,
  ci_width = 0.9,
  yrange = NULL,
  include_xlab = TRUE,
  include_legend = TRUE,
  output_plot = TRUE,
  return_data = FALSE,
  return_plot = FALSE
)

Arguments

pstr_data	a data object with posterior distributions of gamma parameters (must have shape and scale column)
dist	character string specifying the parametric distribution of pstr_data, defaults to gamma
nsamp	number of samples from posterior distribution upon which to base calculations
u	numeric value or vector of assumed duration(s) of time between exposure and monitoring
phi	probability a case becomes symptomatic
durations	durations of active monitoring to plot
ci_width	numeric value between 0 and 1 indicating the nominal value for the eventually computed and displayed CI
yrange	if not NULL, a vector of the ylim to plot
include_xlab	logical, whether to include an x-axis label
include_legend	logical, whether to include a legend
output_plot	logical, whether or not to automatically output the plot
return_data	logical, whether or not to return the data used for plotting
return_plot	logical, whether or not to return the plotted grob

Value

if return_plot is specified, it returns the grob

Examples

plot_risk_uncertainty(ebola_gamma_pstr)

reichlab/activemonitr documentation built on April 9, 2024, 2:17 p.m.