Description Usage Arguments Details Value Source References See Also Examples

Computes the distribution function of the multivariate normal distribution for arbitrary limits and correlation matrices.

1 2 |

`lower` |
the vector of lower limits of length n. |

`upper` |
the vector of upper limits of length n. |

`mean` |
the mean vector of length n. |

`corr` |
the correlation matrix of dimension n. |

`sigma` |
the covariance matrix of dimension n. Either |

`algorithm` |
an object of class |

`...` |
additional parameters (currently given to |

This program involves the computation of multivariate normal probabilities with arbitrary correlation matrices. It involves both the computation of singular and nonsingular probabilities. The implemented methodology is described in Genz (1992, 1993) (for algorithm GenzBretz), in Miwa et al. (2003) for algorithm Miwa (useful up to dimension 20) and Genz (2004) for the TVPACK algorithm (which covers 2- and 3-dimensional problems for semi-infinite integration regions).

Note the default algorithm GenzBretz is randomized and hence slightly depends on
`.Random.seed`

and that both `-Inf`

and `+Inf`

may
be specified in `lower`

and `upper`

. For more details see
`pmvt`

.

The multivariate normal
case is treated as a special case of `pmvt`

with `df=0`

and
univariate problems are passed to `pnorm`

.

The multivariate normal density and random deviates are available using
`dmvnorm`

and `rmvnorm`

.

The evaluated distribution function is returned with attributes

`error` |
estimated absolute error and |

`msg` |
status messages. |

http://www.sci.wsu.edu/math/faculty/genz/homepage

Genz, A. (1992). Numerical computation of multivariate normal probabilities.
*Journal of Computational and Graphical Statistics*, **1**, 141–150.

Genz, A. (1993). Comparison of methods for the computation of multivariate
normal probabilities. *Computing Science and Statistics*, **25**,
400–405.

Genz, A. (2004), Numerical computation of rectangular bivariate and
trivariate normal and t-probabilities, *Statistics and
Computing*, **14**, 251–260.

Genz, A. and Bretz, F. (2009), *Computation of Multivariate Normal and
t Probabilities*. Lecture Notes in Statistics, Vol. 195. Springer-Verlag,
Heidelberg.

Miwa, A., Hayter J. and Kuriki, S. (2003).
The evaluation of general non-centred orthant probabilities.
*Journal of the Royal Statistical Society*, Ser. B, 65, 223–234.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 | ```
n <- 5
mean <- rep(0, 5)
lower <- rep(-1, 5)
upper <- rep(3, 5)
corr <- diag(5)
corr[lower.tri(corr)] <- 0.5
corr[upper.tri(corr)] <- 0.5
prob <- pmvnorm(lower, upper, mean, corr)
print(prob)
stopifnot(pmvnorm(lower=-Inf, upper=3, mean=0, sigma=1) == pnorm(3))
a <- pmvnorm(lower=-Inf,upper=c(.3,.5),mean=c(2,4),diag(2))
stopifnot(round(a,16) == round(prod(pnorm(c(.3,.5),c(2,4))),16))
a <- pmvnorm(lower=-Inf,upper=c(.3,.5,1),mean=c(2,4,1),diag(3))
stopifnot(round(a,16) == round(prod(pnorm(c(.3,.5,1),c(2,4,1))),16))
# Example from R News paper (original by Genz, 1992):
m <- 3
sigma <- diag(3)
sigma[2,1] <- 3/5
sigma[3,1] <- 1/3
sigma[3,2] <- 11/15
pmvnorm(lower=rep(-Inf, m), upper=c(1,4,2), mean=rep(0, m), corr=sigma)
# Correlation and Covariance
a <- pmvnorm(lower=-Inf, upper=c(2,2), sigma = diag(2)*2)
b <- pmvnorm(lower=-Inf, upper=c(2,2)/sqrt(2), corr=diag(2))
stopifnot(all.equal(round(a,5) , round(b, 5)))
``` |

reichlab/mvtnorm-mod-kcde documentation built on May 24, 2017, 10:47 p.m.

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.