get_intersect: Calculating character overlap for two independent stochastic...
In reslp/correlate: Character correlation with phylogenetic trees

This function calculates the overlapping parts of two (or more) sets of stochastically mapped categorical characters. As input it takes two sets of stochastic maps created with the R package phytools. It will return the proportion of the tree where two characters overlap.

1 2	get_intersect(ntrees = 1, nmaps = 1, smap1 = simmap, smap2 = simmap_multi, chars2 = c(0, 1), chars1 = c(0, 1))

`ntrees`	The number of trees which should be analysed. default = 1
`nmaps`	The number of stochastic character maps which should be analysed per tree. default = 1
`smap1`	List of multiPhylo Objects containing stochastic maps for first character. Created with phytools.
`smap2`	List of multiPhylo Objects containing stochastic maps for second character. Created with phytools.
`chars2`	Vector containing character state names which should be analysed for the first set of characters.
`chars1`	Vector containing character state names which should be analysed for the second set of characters.