NEWS.md

In richelbilderbeek/bbbq: The Bilderbeek Bianchi and Bogaart Question

News

Newest versions at top.

bbbq 1.7.1 (unreleased)

NEW FEATURES

• Use 'mhc_allele_name' instead of the misnomer 'mhc_haplotype'

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• Function that use the misnomer 'mhc_haplotype' are redirected to the functions that use 'mhc_allele_name'

bbbq 1.7 (2021-10-08)

NEW FEATURES

• create_consensus_topology_conservation can save multiple sequence alignment

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

bbbq 1.6 (2020-08-20)

NEW FEATURES

• Can predict counts for multiple proteins

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

bbbq 1.5 (2020-08-19)

NEW FEATURES

• Can use EpitopePrediction to predict IC50s of MHC-I haplotypes
• Can use netmhc2pan to predict IC50s of MHC-II haplotypes

MINOR IMPROVEMENTS

• None

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

bbbq 1.4 (2020-08-18)

NEW FEATURES

• Use 21 MHC-II classes, instead of 13
• MHC-II uses a 13-mer, instead of a 9-mer

MINOR IMPROVEMENTS

• Work on per-haplotype per-protein basis

BUG FIXES

• None

DEPRECATED AND DEFUNCT

• None

richelbilderbeek/bbbq documentation built on July 27, 2023, 2:15 a.m.