In richelbilderbeek/bbbq: The Bilderbeek Bianchi and Bogaart Question

Install

TMH prediction: pureseqtmr

To install the pureseqtmr package:

remotes::install_github("richelbilderbeek/pureseqtmr")

The pureseqtmr package relies on PureseqTM, which needs to be installed like this:

pureseqtmrinstall::install_pureseqtm()

MHC-I epitope prediction: EpitopePrediction

To install the EpitopePrediction package:

remotes::install_github("jtextor/EpitopePrediction")

MHC-II epitope prediction: mhcnuggetsr

To install the mhcnuggetsr package:

remotes::install_github("richelbilderbeek/mhcnuggetsr")

The mhcnuggetsr package relies on 'MHCnuggets', which needs to be installed like this:

remotes::install_github("richelbilderbeek/mhcnuggetsrinstall")
mhcnuggetsrinstall::install_mhcnuggets()

richelbilderbeek/bbbq documentation built on July 27, 2023, 2:15 a.m.