hydrophobe_controls: Generates a set of 9mers that do not overlap with...

In richelbilderbeek/bbbq: The Bilderbeek Bianchi and Bogaart Question

Generates a set of 9mers that do not overlap with transmembrane helices and have a very similar hydrophobicity distribution as the set of 9mers that do overlap with transmembrane helices. Input: * proteome_9mer_hydrophobicity_as_data_filename * tmh_9mers_as_data_filename

Description

Output: * hydrophobe_control_peptides_as_data_filename

Usage

hydrophobe_controls(
  proteome_9mer_hydrophobicity_as_data_filename,
  tmh_9mers_as_data_filename
)

Arguments

proteome_9mer_hydrophobicity_as_data_filename	filename to store the proteome 9-mer hydrophobicities in R data format, for example 'work/proteome.9mer.hydrophobicity.Rdata'
tmh_9mers_as_data_filename	filename to store per TMH protein, the indices at which it is TMH, in R data format. for example 'work/tmh.9mers.Rdata'

Author(s)

Richèl J.C. Bilderbeek, adapted from Johannes Textor

richelbilderbeek/bbbq documentation built on July 27, 2023, 2:15 a.m.