hydrophobe_overlap_controls: Performs the same analysis as "calculate-overlap.R", but now...

In richelbilderbeek/bbbq: The Bilderbeek Bianchi and Bogaart Question

Performs the same analysis as "calculate-overlap.R", but now for the 'control population' consisting of 9mers that do not overlap with transmembrane helices.

Description

Inputs: * hydrophobe_control_peptides_as_data_filename

Usage

hydrophobe_overlap_controls(
  hydrophobe_control_peptides_as_data_filename,
  protein_lengths_filename
)

Arguments

hydrophobe_control_peptides_as_data_filename	filename that stores hydrophobe control peptides as R data, for example 'work/hydrophobe-control-peptides.Rdata'
protein_lengths_filename	filename to store the length of all proteins in proteome, for example 'work/protein-lengths.txt'

Author(s)

Richèl J.C. Bilderbeek, adapted from Johannes Textor

richelbilderbeek/bbbq documentation built on July 27, 2023, 2:15 a.m.