create_beast2_validate_cmd_bin: Creates the terminal command to validate a BEAST2 input file...

In richelbilderbeek/beastier: Call 'BEAST2'

Creates the terminal command to validate a BEAST2 input file using a call to the launcher.jar file

Description

Creates the terminal command to validate a BEAST2 input file using a call to the launcher.jar file

Usage

create_beast2_validate_cmd_bin(
  input_filename,
  beast2_bin_path = get_default_beast2_bin_path()
)

Arguments

input_filename	the name of a BEAST2 input XML file. This file usually has an .xml extension. Use create_temp_input_filename to create a temporary filename with that extension.
beast2_bin_path	name of the BEAST2 binary file (usually simply beast). Use get_default_beast2_bin_path to get the default BEAST binary file's path

Value

a character vector, of which the first element is the command (java, in this case), and the others are arguments (-jar, in this case, followed by more arguments.

Author(s)

Richèl J.C. Bilderbeek

Examples

check_empty_beaustier_folders()

if (is_beast2_installed() && beautier::is_on_ci()) {
  create_beast2_validate_cmd_bin(
    input_filename = "input.xml"
  )
}

check_empty_beaustier_folders()

richelbilderbeek/beastier documentation built on Nov. 8, 2023, 9:29 p.m.