Files in richelbilderbeek/beastier
beastier: BEAST2 from R

.Rbuildignore
.gitignore
.travis.yml
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/are_beast2_input_lines.R R/beastier.R R/create_beast2_run_cmd.R R/create_beast2_validate_cmd.R R/create_posterior.R R/create_random_alignment.R R/create_random_fasta.R R/create_random_fastas.R R/create_random_phylogeny.R R/default_param_doc.R R/files_exist.R R/get_alignment_ids.R R/get_default_beast2_folder.R R/get_default_beast2_jar_path.R R/get_duplicate_ids.R R/get_path.R R/get_paths.R R/get_trees_filenames.R R/gives_beast2_warning.R R/has_unique_ids.R R/install_beast2.R R/is_beast2_input_file.R R/is_on_travis.R R/remove_files.R R/run_beast2.R R/save_lines.R README.md
appveyor.yml
beastier.Rproj
check_dead_links
code_of_conduct.md faq.md
inst/WORDLIST
inst/extdata/2_4.xml
inst/extdata/anthus_15_15.xml
inst/extdata/anthus_15_15_long.xml
inst/extdata/anthus_15_26.xml
inst/extdata/anthus_15_na.xml
inst/extdata/anthus_2_4.xml
inst/extdata/anthus_aco.fas
inst/extdata/anthus_na_15.xml
inst/extdata/anthus_na_na.xml
inst/extdata/anthus_nd2.fas
inst/extdata/beast2_example_output.log
inst/extdata/beast2_example_output.trees
inst/extdata/beast2_example_output.xml
inst/extdata/beast2_example_output.xml.state
inst/extdata/beast2_warning.xml
inst/extdata/read_beast2_trees_example.trees
man/are_beast2_input_lines.Rd man/are_beast2_input_lines_deep.Rd man/are_beast2_input_lines_fast.Rd man/beastier.Rd man/create_beast2_run_cmd.Rd man/create_beast2_validate_cmd.Rd man/default_params_doc.Rd man/get_alignment_ids.Rd man/get_beastier_path.Rd man/get_beastier_paths.Rd man/get_default_beast2_folder.Rd man/get_default_beast2_jar_path.Rd man/get_trees_filenames.Rd man/gives_beast2_warning.Rd man/install_beast2.Rd man/is_beast2_input_file.Rd man/run_beast2.Rd
pics/AppVeyor.png
pics/Codecov.png
pics/R_logo.svg.png
pics/Rlogo.svg
pics/TravisCI.png
pics/altered_beast.jpeg
pics/altered_beast.png
pics/beast_xmen.png
pics/beast_xmen.svg
pics/beastier_logo.png
pics/beastier_logo_1_4.png
pics/beastier_logo_big.png
pics/beastier_logo_rough.png
pics/hatched_beast.png
pics/hatched_beast_16x.png
pics/hippo.png
pics/hippo_mono_background.png
pics/hippo_mono_background_2.png
pics/lumier_logo.png
pics/lumier_logo_big.png
pics/lumiere.png
pics/lumiere_alias_big.png
pics/lumiere_anti_alias_big.png
pics/r_logo.png
pics/super_beast.png
pics/super_beast_10x.png
tests/spelling.R tests/testthat.R tests/testthat/test-are_beast2_input_lines.R tests/testthat/test-create_beast2_run_cmd.R tests/testthat/test-create_beast2_validate_cmd.R tests/testthat/test-create_posterior.R tests/testthat/test-create_random_alignment.R tests/testthat/test-create_random_fasta.R tests/testthat/test-create_random_phylogeny.R tests/testthat/test-get_alignment_ids.R tests/testthat/test-get_default_beast2_folder.R tests/testthat/test-get_default_beast2_jar_path.R tests/testthat/test-get_duplicate_ids.R tests/testthat/test-get_path.R tests/testthat/test-get_paths.R tests/testthat/test-get_trees_filenames.R tests/testthat/test-gives_beast2_warning.R tests/testthat/test-has_unique_ids.R tests/testthat/test-install_beast2.R tests/testthat/test-is_beast2_input_file.R tests/testthat/test-run_beast2.R tests/testthat/test-save_lines.R
richelbilderbeek/beastier documentation built on June 8, 2018, 10:12 a.m.