View source: R/run_beast2_from_options.R
run_beast2_from_options | R Documentation |
Run BEAST2
run_beast2_from_options(beast2_options = create_beast2_options())
beast2_options |
a set of BEAST2 options, that are the R equivalent of the BEAST2 command-line options, as can be created by create_beast2_options |
The text sent to STDOUT
and STDERR
.
It will create the file with name output_state_filenames
Richèl J.C. Bilderbeek
check_empty_beaustier_folders()
if (is_beast2_installed() && beautier::is_on_ci()) {
beast2_options <- create_beast2_options(
input_filename = get_beastier_path("2_4.xml")
)
run_beast2_from_options(beast2_options)
file.remove(beast2_options$output_state_filename)
remove_beaustier_folders()
}
check_empty_beaustier_folders()
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