#' Internal function
#'
#' Check if the MCMC's treelog file can be created.
#' Will \link{stop} if not
#' @inheritParams default_params_doc
#' @return Nothing.
#' Will \link{stop} if the MCMC's treelog file is absent and cannot be created.
#' @author Richèl J.C. Bilderbeek
#' @export
check_can_create_treelog_file <- function(
beast2_options
) {
# Extract the treelog file
check_true(file.exists(beast2_options$input_filename))
treelog_filename <- extract_treelog_filename_from_beast2_input_file(
input_filename = beast2_options$input_filename
)
if (file.exists(treelog_filename)) {
file.remove(treelog_filename)
return(invisible(beast2_options))
}
tryCatch(
check_can_create_file(
filename = treelog_filename, overwrite = FALSE
),
error = function(e) {
stop("Cannot create treelog file '", treelog_filename, "'")
}
)
invisible(beast2_options)
}
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.