inst/extdata/README.md

In richelbilderbeek/beastier: Call 'BEAST2'

extdata

beast beast2_error.xml

File to create a BEAST2 error.

:warning: the BEAST2 NS package must not be installed :warning:

Upon running this file in BEAST2, the output will end with:

Error 1017 parsing the xml input file

Class could not be found. Did you mean beast.core.util.ESS?
Perhaps a package required for this class is not installed?

Error detected about here:
  <beast>
      <run id='mcmc' spec='beast.gss.NS'>

The error message says it all: one needs to install the BEAST2 NS package. beastier cannot do this (note that mauricer can).

beast2_warning.xml

File to create a BEAST2 warning.

Upon running this file in BEAST2, the output will end with:

WARNING: StateNode (freqParameter.s:anthus_aco) found that has no effect on posterior!

[...]
Fatal exception: Could not find a proper state to initialise. Perhaps try another seed.
See http://www.beast2.org/2018/07/04/fatal-errors.html for other possible solutions.
[...]

The word WARNING is used to detect a warning. Regardless of the fatal exceptions, BEAST2 exits without an error code (i.e. exit code zero).

richelbilderbeek/beastier documentation built on Nov. 8, 2023, 9:29 p.m.