are_snps: Determine if the one or more strings are a SNP in HGVS...

In richelbilderbeek/ncbi: Does Stuff

Determine if the one or more strings are a SNP in HGVS sequence. This is the vectorized version of is_snp

Description

Determine if the one or more strings are a SNP in HGVS sequence. This is the vectorized version of is_snp

Usage

are_snps(s)

Arguments

s	string in HVGS format to be parsed, for example, NP_000585.2:p.Gly144Asp

Examples

# These are SNPs
are_snps("NP_001771.1:p.Ser91Pro")
are_snps("NP_001254627.1:p.Val237Met")
are_snps("NP_055635.3:p.Ala55Gly")

# A synonymous mutation at the DNA level is no SNP
are_snps(s = "NP_001771.1:p.Phe89=")

# A deletion is no SNP
are_snps("NP_001771.1:p.Leu64_Gly74del")

# A frame shift at the DNA level is no SNP
are_snps("NP_001771.1:p.Asp167fs")

richelbilderbeek/ncbi documentation built on July 9, 2023, 3:51 a.m.