create_msa: Create a multiple sequence alignment using COBALT

In richelbilderbeek/ncbi: Does Stuff

Create a multiple sequence alignment using COBALT

Description

Create a multiple sequence alignment using COBALT

Usage

create_msa(
  fasta_text,
  cobalt_options = cobaltr::create_cobalt_options(),
  cobalt_folder = cobaltr::get_default_cobalt_folder()
)

Arguments

fasta_text	text of a FASTA file
cobalt_options	a set of COBALT options, as can be created by create_cobalt_options
cobalt_folder	the folder where COBALT is installed in. Use get_default_cobalt_folder to get the default COBALT folder

Value

the FASTA text of the MSA

richelbilderbeek/ncbi documentation built on July 9, 2023, 3:51 a.m.