is_hgvs_in_tmh: Determine if a HGVS is a mutation in a TMH part of membrane...

In richelbilderbeek/ncbi: Does Stuff

Determine if a HGVS is a mutation in a TMH part of membrane protein

Description

Determine if a HGVS is a mutation in a TMH part of membrane protein

Usage

is_hgvs_in_tmh(
  hgvs,
  verbose = FALSE,
  pureseqtm_folder_name = pureseqtmr::get_default_pureseqtm_folder(),
  temp_fasta_filename = tempfile(fileext = ".fasta")
)

Arguments

hgvs	a variation in HGVS ('Human Genome Variation Society') format
verbose	set to TRUE for more output
pureseqtm_folder_name	PureseqTM folder name, as can be obtained by get_default_pureseqtm_folder.
temp_fasta_filename	name for a temporary FASTA file

richelbilderbeek/ncbi documentation built on July 9, 2023, 3:51 a.m.