Files in richelbilderbeek/pureseqtmr

Predict Transmembrane Protein Topology

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/custom.md .github/ISSUE_TEMPLATE/feature_request.md CODE_OF_CONDUCT.md CONTRIBUTING.md NEWS.md R/RcppExports.R R/are_tmhs.R R/are_valid_protein_sequences.R R/calc_distance_to_tmh_center_from_topology.R R/calc_distance_to_tmh_center_from_topology_str.R R/check_protein_sequence.R R/check_protein_sequences.R R/check_pureseqtm_installation.R R/check_topology.R R/check_topology_str.R R/convert_tmhmm_to_pureseqtm_topology.R R/count_n_tmhs.R R/create_pureseqtm_files.R R/create_pureseqtm_proteome_file.R R/default_params_doc.R R/get_default_pureseqtm_folder.R R/get_example_filename.R R/get_example_filenames.R R/get_pureseqtm_url.R R/get_pureseqtm_version.R R/install_pureseqtm.R R/is_on_ci.R R/is_protein_name_line.R R/is_pureseqtm_installed.R R/is_tmh.R R/is_topology_line.R R/is_valid_protein_sequence.R R/load_fasta_file_as_tibble.R R/load_fasta_file_as_tibble_cpp.R R/load_fasta_file_as_tibble_r.R R/load_topology_file_as_tibble.R R/mock_predict_topologies_from_sequences.R R/mock_predict_topology.R R/parse_pureseqtm_proteome_text.R R/plot_topology.R R/predict_topologies_from_sequences.R R/predict_topology.R R/predict_topology_from_sequence.R R/pureseqtmr.R R/pureseqtmr_report.R R/run_pureseqtm_proteome.R R/save_tibble_as_fasta_file.R R/tally_tmhs.R R/uninstall_pureseqtm.R R/use_rcpp.R README.md doc/speed_comparison.md man/are_tmhs.Rd man/are_valid_protein_sequences.Rd man/calc_distance_to_tmh_center_from_topology.Rd man/calc_distance_to_tmh_center_from_topology_str.Rd man/calc_distance_to_tmh_center_from_topology_str_cpp_stl.Rd man/check_protein_sequence.Rd man/check_protein_sequences.Rd man/check_pureseqtm_installation.Rd man/check_topology.Rd man/check_topology_str.Rd man/convert_tmhmm_to_pureseqtm_topology.Rd man/count_n_tmhs.Rd man/create_pureseqtm_files.Rd man/create_pureseqtm_proteome_file.Rd man/default_params_doc.Rd man/get_default_pureseqtm_folder.Rd man/get_example_filename.Rd man/get_example_filenames.Rd man/get_pureseqtm_url.Rd man/get_pureseqtm_version.Rd man/install_pureseqtm.Rd man/is_on_appveyor.Rd man/is_on_ci.Rd man/is_on_github_actions.Rd man/is_on_travis.Rd man/is_protein_name_line.Rd man/is_pureseqtm_installed.Rd man/is_tmh.Rd man/is_topology_line.Rd man/is_valid_protein_sequence.Rd man/load_fasta_file_as_tibble.Rd man/load_fasta_file_as_tibble_cpp.Rd man/load_fasta_file_as_tibble_cpp_raw.Rd man/load_fasta_file_as_tibble_r.Rd man/load_topology_file_as_tibble.Rd man/mock_predict_topologies_from_sequences.Rd man/mock_predict_topology.Rd man/parse_pureseqtm_proteome_text.Rd man/plot_topology.Rd man/predict_topologies_from_sequences.Rd man/predict_topology.Rd man/predict_topology_from_sequence.Rd man/pureseqtmr.Rd man/pureseqtmr_report.Rd man/run_pureseqtm_proteome.Rd man/save_tibble_as_fasta_file.Rd man/tally_tmhs.Rd man/uninstall_pureseqtm.Rd scripts/create_covid_fig.R scripts/fasta_to_topo.R tests/testthat.R tests/testthat/test-are_tmhs.R tests/testthat/test-are_valid_protein_sequences.R tests/testthat/test-calc_distance_to_tmh_center_from_topology.R tests/testthat/test-calc_distance_to_tmh_center_from_topology_str.R tests/testthat/test-check_protein_sequence.R tests/testthat/test-check_protein_sequences.R tests/testthat/test-check_tmhmm_installation.R tests/testthat/test-check_topology.R tests/testthat/test-check_topology_str.R tests/testthat/test-convert_tmhmm_to_pureseqtm_topology.R tests/testthat/test-count_n_tmhs.R tests/testthat/test-create_pureseqtm_files.R tests/testthat/test-create_pureseqtm_proteome_file.R tests/testthat/test-get_default_pureseqtm_folder.R tests/testthat/test-get_example_filename.R tests/testthat/test-get_example_filenames.R tests/testthat/test-get_pureseqtm_example_filename.R tests/testthat/test-get_pureseqtm_version.R tests/testthat/test-is_fasta_file.R tests/testthat/test-is_protein_name_line.R tests/testthat/test-is_pureseqtm_installed.R tests/testthat/test-is_tmh.R tests/testthat/test-is_topology_line.R tests/testthat/test-is_valid_protein_sequence.R tests/testthat/test-load_fasta_file_as_tibble.R tests/testthat/test-load_fasta_file_as_tibble_cpp.R tests/testthat/test-load_fasta_file_as_tibble_r.R tests/testthat/test-load_topology_file_as_tibble.R tests/testthat/test-mock_predict_topologies_from_sequences.R tests/testthat/test-mock_predict_topology.R tests/testthat/test-parse_pureseqtm_proteome_text.R tests/testthat/test-plot_topology.R tests/testthat/test-predict_topologies_from_sequences.R tests/testthat/test-predict_topology.R tests/testthat/test-predict_topology_from_sequence.R tests/testthat/test-pureseqtmr_report.R tests/testthat/test-run_pureseqtm_proteome.R tests/testthat/test-save_tibble_as_fasta_file.R tests/testthat/test-tally_tmhs.R tests/testthat/test-uninstall_pureseqtm.R vignettes/demo.Rmd