create_razzo_pir_params: Creates a 'pir_params' with the 'razzo' setup and naming...

In richelbilderbeek/razzo: The Error if Nature is MBD

Description

Creates a pir_params with the razzo setup and naming scheme

Usage

create_razzo_pir_params(
  has_candidates = FALSE,
  has_twinning = TRUE,
  folder_name = peregrine::get_pff_tempfile(),
  rng_seed = 1,
  error_measure_params = pirouette::create_error_measure_params()
)

Arguments

has_candidates	if there are candidate experiments yes/no
has_twinning	do use twinning yes/no
folder_name	name of the main folder
rng_seed	RNG seed for alignment simulation and inference
error_measure_params	parameters to set how the error between given tree and inferred trees in measure, as can be created by create_error_measure_params

richelbilderbeek/razzo documentation built on March 10, 2021, 1:17 p.m.