Files in richelbilderbeek/tmhmm

Interface to TMHMM

CODE_OF_CONDUCT.md CONTRIBUTING.md NEWS.md R/are_tmhs.R R/are_topology_sequences.R R/check_tmhmm_installation.R R/check_topology.R R/default_params_doc.R R/fasta_text_to_tibble.R R/get_default_tmhmm_bin_path.R R/get_default_tmhmm_folder.R R/get_tmhmm_url.R R/install_tmhmm.R R/is_locatome_line.R R/is_on_ci.R R/is_protein_name_line.R R/is_tmh.R R/is_tmhmm_installed.R R/is_tmhmm_result.R R/is_tmhmm_set_up.R R/is_topology_sequence.R R/is_topology_text.R R/is_url_valid.R R/locatome_to_df.R R/mock_predict_topology_from_sequence.R R/mock_run_tmhmm.R R/mock_run_tmhmm_to_file.R R/parse_fasta_file.R R/plot_locatome.R R/plot_topology.R R/plot_topology_text.R R/predict_topologies_from_sequences.R R/predict_topology.R R/predict_topology_from_sequence.R R/run_tmhmm.R R/run_tmhmm_on_one_protein_fasta_file.R R/run_tmhmm_on_sequence.R R/run_tmhmm_to_file.R R/set_up_tmhmm.R R/tally_locatome.R R/tally_tmhs.R R/tmhmm.R R/tmhmm_self_test.R R/uninstall_tmhmm.R README.md man/are_tmhs.Rd man/are_topology_sequences.Rd man/check_tmhmm_installation.Rd man/check_topology.Rd man/default_params_doc.Rd man/fasta_text_to_tibble.Rd man/get_default_tmhmm_bin_path.Rd man/get_default_tmhmm_folder.Rd man/get_tmhmm_url.Rd man/install_tmhmm.Rd man/install_tmhmm_bin.Rd man/is_locatome_line.Rd man/is_on_appveyor.Rd man/is_on_ci.Rd man/is_on_github_actions.Rd man/is_on_travis.Rd man/is_protein_name_line.Rd man/is_tmh.Rd man/is_tmhmm_bin_installed.Rd man/is_tmhmm_installed.Rd man/is_tmhmm_result.Rd man/is_tmhmm_set_up.Rd man/is_topology_sequence.Rd man/is_topology_text.Rd man/is_url_valid.Rd man/locatome_to_df.Rd man/mock_predict_topology_from_sequence.Rd man/mock_run_tmhmm.Rd man/mock_run_tmhmm_to_file.Rd man/parse_fasta_file.Rd man/plot_locatome.Rd man/plot_topology.Rd man/plot_topology_text.Rd man/predict_topologies_from_sequences.Rd man/predict_topology.Rd man/predict_topology_from_sequence.Rd man/run_tmhmm.Rd man/run_tmhmm_on_one_protein_fasta_file.Rd man/run_tmhmm_on_sequence.Rd man/run_tmhmm_to_file.Rd man/set_up_tmhmm.Rd man/tally_locatome.Rd man/tally_tmhs.Rd man/tmhmm.Rd man/tmhmm_self_test.Rd man/uninstall_tmhmm.Rd scripts/fasta_to_topo.R scripts/map_aa_to_topo.R scripts/predict_sars_cov_2_topology.R tests/testthat.R tests/testthat/test-are_tmhs.R tests/testthat/test-are_topology_sequences.R tests/testthat/test-check_tmhmm_installation.R tests/testthat/test-check_topology.R tests/testthat/test-fasta_text_to_tibble.R tests/testthat/test-get_default_tmhmm_bin_path.R tests/testthat/test-install_tmhmm.R tests/testthat/test-install_tmhmm_bin.R tests/testthat/test-is_locatome_line.R tests/testthat/test-is_protein_name_line.R tests/testthat/test-is_tmh.R tests/testthat/test-is_tmhmm_installed.R tests/testthat/test-is_tmhmm_result.R tests/testthat/test-is_tmhmm_set_up.R tests/testthat/test-is_topology_sequence.R tests/testthat/test-is_topology_text.R tests/testthat/test-is_url_valid.R tests/testthat/test-locatome_to_df.R tests/testthat/test-mock_predict_topology_from_sequence.R tests/testthat/test-mock_run_tmhmm.R tests/testthat/test-mock_run_tmhmm_to_file.R tests/testthat/test-parse_fasta_file.R tests/testthat/test-plot_locatome.R tests/testthat/test-plot_topology.R tests/testthat/test-plot_topology_text.R tests/testthat/test-predict_topologies_from_sequences.R tests/testthat/test-predict_topology.R tests/testthat/test-predict_topology_from_sequence.R tests/testthat/test-run_tmhmm.R tests/testthat/test-run_tmhmm_on_one_protein_fasta_file.R tests/testthat/test-run_tmhmm_on_sequence.R tests/testthat/test-run_tmhmm_to_file.R tests/testthat/test-tally_locatome.R tests/testthat/test-tally_tmhs.R tests/testthat/test-tmhmm_self_test.R tests/testthat/test-uninstall_tmhmm.R vignettes/demo.Rmd