TestResults: Matrix of Test Results - class
In richierocks/limma2: Linear Models for Microarray Data

Description Usage Arguments Slots/List Components Methods Author(s) See Also Examples

A matrix-based class for storing the results of simultanous tests. TestResults objects are normally created by classifyTestsF, classifyTestsT or classifyTestsP.

1 2	## S3 method for class 'TestResults' summary(object, ...)

`object`	object of class `TestResults`
`...`	other arguments are not used

TestResults objects can be created by new("TestResults",results) where results is a matrix. Objects of this class contain no slots (other than .Data), although the attributes dim and dimnames may be treated as slots.

This class inherits directly from class matrix so any operation appropriate for matrices will work on objects of this class. show and summary methods are also implemented.

Functions in LIMMA which operate on TestResults objects include heatDiagram, vennCounts, vennDiagram, write.fit.

Gordon Smyth

02.Classes gives an overview of all the classes defined by this package. 08.Tests gives an overview of multiple testing.

## Not run: 
#  Assume a data object MA and a design matrix
fit <- lmFit(MA, design)
fit <- eBayes(fit)
results <- decideTests(fit)
summary(results)

## End(Not run)