Files in richierocks/limma2
Linear Models for Microarray Data
DESCRIPTION
NAMESPACE
R/alias2Symbol.R
R/arrayWeights.R
R/arrayWeightsSimple.R
R/avearrays.R
R/background-kooperberg.R
R/background-normexp.R
R/background.R
R/barcodeplot.R
R/beadCountWeights.R
R/bwss.R
R/classes.R
R/combine.R
R/contrastAsCoef.R
R/contrasts.R
R/convest.R
R/decidetests.R
R/dups.R
R/ebayes.R
R/fitFDistRobustly.R
R/fitGammaIntercept.R
R/genas.R
R/geneset-camera.R
R/geneset-roast.R
R/geneset-romer.R
R/geneset-wilcox.R
R/lmfit.R
R/loessFit.R
R/mergeScans.R
R/modelmatrix.R
R/neqc.R
R/norm.R
R/plotFB.R
R/plotMDS.R
R/plotdensities.R
R/plotlines.R
R/plotrldf.R
R/plots-fit.R
R/plots-image.R
R/plots-ma.R
R/poolvar.R
R/predFCm.R
R/printtipWeights.R
R/propTrueNull.R
R/propexpr.R
R/qqt.R
R/rankSumTestWithCorrelation.R
R/read-ilmn.R
R/read-imagene.R
R/read-maimages.R
R/read.R
R/readHeader.R
R/removeBatchEffect.R
R/roc.R
R/selmod.R
R/sepchannel.R
R/squeezeVar.R
R/subsetting.R
R/toptable.R
R/treat.R
R/utility.R
R/venn.R
R/voom.R
R/vooma.R
R/weightedmedian.R
R/weights.R
R/write.R
R/zscore.R
R/zscoreHyper.R
R/zzz.R
README.md
TODO.txt
build/vignette.rds
inst/CITATION
inst/NEWS.Rd
inst/doc/changelog.txt
inst/doc/index.html
inst/doc/intro.Rnw
inst/doc/intro.pdf
inst/doc/usersguide.pdf
man/01Introduction.Rd
man/02classes.Rd
man/03reading.Rd
man/04Background.Rd
man/05Normalization.Rd
man/06linearmodels.Rd
man/07SingleChannel.Rd
man/08Tests.Rd
man/09Diagnostics.Rd
man/10Other.Rd
man/EList.Rd
man/LargeDataObject.Rd
man/PrintLayout.Rd
man/TestResults.Rd
man/alias2Symbol.Rd
man/anova-method.Rd
man/arrayWeights.Rd
man/arrayWeightsQuick.Rd
man/asMatrixWeights.Rd
man/asdataframe.Rd
man/asmalist.Rd
man/asmatrix.Rd
man/auROC.Rd
man/avearrays.Rd
man/avedups.Rd
man/avereps.Rd
man/backgroundcorrect.Rd
man/barcodeplot.Rd
man/beadCountWeights.Rd
man/blockDiag.Rd
man/bwss.Rd
man/bwss.matrix.Rd
man/camera.Rd
man/cbind.Rd
man/changelog.Rd
man/channel2M.Rd
man/classifytests.Rd
man/contrastAsCoef.Rd
man/contrasts.fit.Rd
man/controlStatus.Rd
man/decideTests.Rd
man/dim.Rd
man/dimnames.Rd
man/dupcor.Rd
man/ebayes.Rd
man/exprsMA.Rd
man/fitGammaIntercept.Rd
man/fitfdist.Rd
man/fitted.MArrayLM.Rd
man/genas.Rd
man/geneSetTest.Rd
man/getEAWP.Rd
man/getSpacing.Rd
man/getlayout.Rd
man/gls.series.Rd
man/gridspotrc.Rd
man/heatdiagram.Rd
man/helpMethods.Rd
man/imageplot.Rd
man/imageplot3by2.Rd
man/intraspotCorrelation.Rd
man/isfullrank.Rd
man/isnumeric.Rd
man/kooperberg.Rd
man/limmaUsersGuide.Rd
man/lm.series.Rd
man/lmFit.Rd
man/lmscFit.Rd
man/loessfit.Rd
man/ma3x3.Rd
man/makeContrasts.Rd
man/makeunique.Rd
man/malist.Rd
man/marraylm.Rd
man/mdplot.Rd
man/merge.Rd
man/mergeScansRG.Rd
man/modelMatrix.Rd
man/modifyWeights.Rd
man/mrlm.Rd
man/nec.Rd
man/normalizeCyclicLoess.Rd
man/normalizeMedianAbsValues.Rd
man/normalizeRobustSpline.Rd
man/normalizeVSN.Rd
man/normalizeWithinArrays.Rd
man/normalizebetweenarrays.Rd
man/normalizeprintorder.Rd
man/normalizequantiles.Rd
man/normexpfit.Rd
man/normexpfitcontrol.Rd
man/normexpfitdetectionp.Rd
man/normexpsignal.Rd
man/plotDensities.Rd
man/plotFB.Rd
man/plotMDS.Rd
man/plotRLDF.Rd
man/plotSA.Rd
man/plotlines.Rd
man/plotma.Rd
man/plotma3by2.Rd
man/plotprinttiploess.Rd
man/poolvar.Rd
man/predFCm.Rd
man/printHead.Rd
man/printorder.Rd
man/printtipWeights.Rd
man/propTrueNull.Rd
man/propexpr.Rd
man/protectMetachar.Rd
man/qqt.Rd
man/qualwt.Rd
man/rankSumTestwithCorrelation.Rd
man/read.columns.Rd
man/read.ilmn.Rd
man/read.ilmn.targets.Rd
man/read.maimages.Rd
man/readGPRHeader.Rd
man/readImaGeneHeader.Rd
man/readSpotTypes.Rd
man/readTargets.Rd
man/readgal.Rd
man/removeBatchEffect.Rd
man/removeext.Rd
man/residuals.MArrayLM.Rd
man/rglist.Rd
man/roast.Rd
man/romer.Rd
man/selectmodel.Rd
man/squeezeVar.Rd
man/strsplit2.Rd
man/subsetting.Rd
man/summary.Rd
man/symbols2indices.Rd
man/targetsA2C.Rd
man/tmixture.Rd
man/topRomer.Rd
man/toptable.Rd
man/trigammainverse.Rd
man/trimWhiteSpace.Rd
man/uniquegenelist.Rd
man/unwrapdups.Rd
man/venn.Rd
man/volcanoplot.Rd
man/voom.Rd
man/vooma.Rd
man/weightedmedian.Rd
man/writefit.Rd
man/zscore.Rd
src/normexp.c
tests/limma-Tests.R
tests/limma-Tests.Rout.save
vignettes/intro.Rnw
