Man pages for ricoderks/Rcpm
General functions for the Center of Proteomics and Metabolomics (LUMC)
| bubble_plot | Create bubble plots |
| check_alignment | Check the alignment of mzXML files |
| diff_plot | Create difference plots |
| equate | Quantile equating |
| get_mzxml_spectra | Retrieve MS1 spectra from a mzXML file |
| m_pow_x | Modeling power |
| msca | Multilevel Simultaneous Component Analysis (MSCA) |
| msca_p | Multilevel Simultaneous Component Analysis (MSCA-P) |
| msms_search_lipidmaps | Do a MSMS search on the Glycerophospholipid MS/MS Prediction... |
| ms_search_lipidmaps | Do a MS search on the LMSD database from LipidMaps |
| multi_ellipse | Create a Hotelling T2 ellipse for a PCA score plot per group |
| multiplot | Multiple plot function (Deprecated) |
| ncomp_opls | Find the optimal number of OPLS components |
| o2pls | Orthogonal Projections to Latent Structures (OPLS) for a... |
| o2pls_pred | Prediction function of the opls package |
| opls | Orthogonal Projections to Latent Structures (OPLS) for a... |
| opls_pred | Prediction function of the opls package |
| pca_plots | Create nice PCA plots. |
| perm_test | Permutation test for PLS and PLS-DA models |
| plot_histogram | Plot nice histogram |
| pqn | Perform Probabilistic Quotient Normalization |
| preprocess | Center and scale your data |
| qc_plot | Create QC plots |
| qc_rlsc | Perform QC-RLSC for batch correction of chromatographic... |
| Rcpm-package | General functions for the Center of Proteomics and... |
| read_mgf | Read mgf file |
| reverse_predict | Do a reverse prediction on a linear regression |
| simple_ellipse | Create a Hotelling T2 ellipse for a PCA score plot |
| summary_fit | show summary of fit of a PCA model |
| summary_se | Give a summary of a data frame (Deprecated) |
| unmap | Dummy matrix for an outcome factor |
| vip | Implementation of VIP (Variable Importance in Projection) for... |
| vip_jh | Implementation of VIP (Variable Importance in Projection) for... |
| write_mgf | Write mgf file |
