API for rikenbit/scTensor
Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition

Global functions
.BODY3 Source code
.BODY4 Source code
.BODY8 Source code
.BODY8_2 Source code
.CCIhyperGraphPlot Source code
.CCIhyperGraphPlot_2 Source code
.CPM Source code
.CPMED Source code
.CPT Source code
.DGNENRICHMENT Source code
.DOENRICHMENT Source code
.ENRICHMENT Source code
.FTT Source code
.GOENRICHMENT Source code
.HCLUST Source code
.LIGANDALL_BODY Source code
.LIGAND_BODY Source code
.LIGAND_BODY_2 Source code
.MAINHEADER Source code
.MeSHENRICHMENT Source code
.NCGENRICHMENT Source code
.OUTLIERS Source code
.RECEPTORALL_BODY Source code
.RECEPTOR_BODY Source code
.RECEPTOR_BODY_2 Source code
.ReactomeENRICHMENT Source code
.SinglePlot Source code
.XYZ_ENRICH Source code
.XYZ_ENRICH_2 Source code
.XYZ_HEADER1 Source code
.XYZ_HEADER1_2 Source code
.XYZ_HEADER2 Source code
.XYZ_HEADER2_2 Source code
.XYZ_HEADER3 Source code
.XYZ_HEADER3_2 Source code
.Zscaling Source code
.annotationhub_taxid Source code
.cellCellDecomp Source code
.cellCellDecomp.CabelloAguilar Source code
.cellCellDecomp.Distance Source code
.cellCellDecomp.Distance.LR Source code
.cellCellDecomp.Halpern Source code
.cellCellDecomp.LabelPerm.LR Source code
.cellCellDecomp.Pearson Source code
.cellCellDecomp.Pearson.LR Source code
.cellCellDecomp.PossibleCombination Source code
.cellCellDecomp.Second Source code
.cellCellDecomp.Spearman Source code
.cellCellDecomp.Spearman.LR Source code
.cellCellDecomp.Third Source code
.cellCellDecomp.Third_2 Source code
.cellCellDecomp.Third_3 Source code
.cellCellRanks Source code
.cellCellReconst Source code
.cellCellReport Source code
.cellCellReport.Third Source code
.cellCellReport.Third_2 Source code
.cellCellSetting Source code
.cellType Source code
.celltypemergedtensor Source code
.celltypemergedtensor.ca Source code
.celltypemergedtensor.ca_2 Source code
.celltypemergedtensor.hl Source code
.celltypemergedtensor.hl_2 Source code
.celltypemergedtensor_2 Source code
.check_NULL_DGN Source code
.check_NULL_DGN_2 Source code
.check_NULL_DO Source code
.check_NULL_DO_2 Source code
.check_NULL_GO_BP Source code
.check_NULL_GO_BP_2 Source code
.check_NULL_GO_CC Source code
.check_NULL_GO_CC_2 Source code
.check_NULL_GO_MF Source code
.check_NULL_GO_MF_2 Source code
.check_NULL_MeSH_A Source code
.check_NULL_MeSH_A_2 Source code
.check_NULL_MeSH_B Source code
.check_NULL_MeSH_B_2 Source code
.check_NULL_MeSH_C Source code
.check_NULL_MeSH_C_2 Source code
.check_NULL_MeSH_D Source code
.check_NULL_MeSH_D_2 Source code
.check_NULL_MeSH_E Source code
.check_NULL_MeSH_E_2 Source code
.check_NULL_MeSH_F Source code
.check_NULL_MeSH_F_2 Source code
.check_NULL_MeSH_G Source code
.check_NULL_MeSH_G_2 Source code
.check_NULL_MeSH_H Source code
.check_NULL_MeSH_H_2 Source code
.check_NULL_MeSH_I Source code
.check_NULL_MeSH_I_2 Source code
.check_NULL_MeSH_J Source code
.check_NULL_MeSH_J_2 Source code
.check_NULL_MeSH_K Source code
.check_NULL_MeSH_K_2 Source code
.check_NULL_MeSH_L Source code
.check_NULL_MeSH_L_2 Source code
.check_NULL_MeSH_M Source code
.check_NULL_MeSH_M_2 Source code
.check_NULL_MeSH_N Source code
.check_NULL_MeSH_N_2 Source code
.check_NULL_MeSH_V Source code
.check_NULL_MeSH_V_2 Source code
.check_NULL_MeSH_Z Source code
.check_NULL_MeSH_Z_2 Source code
.check_NULL_NCG Source code
.check_NULL_NCG_2 Source code
.check_NULL_Reactome Source code
.check_NULL_Reactome_2 Source code
.core2table Source code
.core2table_2 Source code
.divLR Source code
.eachRender Source code
.eachRender_2 Source code
.eachVecLR Source code
.extractLR Source code
.fastPossibleCombination Source code
.geneHyperGraphPlot Source code
.geneHyperGraphPlot_2 Source code
.geneInformation Source code
.geneInformation_taxid Source code
.genePlot Source code
.ggdefault_cols Source code
.hyperLinks Source code
.importAssays Source code
.labelpermutation Source code
.labelpermutation.ca Source code
.labelpermutation.hl Source code
.ligandPatternPlot Source code
.matDrop Source code
.matFC Source code
.matRnbinom Source code
.meanC Source code
.myvisNetwork Source code
.oma4 Source code
.omasize Source code
.receptorPatternPlot Source code
.setColor Source code
.setDEG Source code
.shrink Source code
.shrink2 Source code
.shrinkLR Source code
.shrinkNonLR Source code
.simulateDropoutCounts Source code
.slowPossibleCombination Source code
.smallTwoDplot Source code
.tagCloud Source code
.tagCloud_2 Source code
.uniqueLR Source code
CCSParams-class Man page
GermMale Man page
cellCellDecomp Man page
cellCellDecomp,SingleCellExperiment-method Man page
cellCellRanks Man page
cellCellRanks,SingleCellExperiment-method Man page
cellCellReport Man page
cellCellReport,SingleCellExperiment-method Man page
cellCellSetting Man page
cellCellSetting,SingleCellExperiment-method Man page
cellCellSimulate Man page Source code
cellCellSimulate,SingleCellExperiment-method Man page
getParam Man page
getParam,CCSParams-method Man page
labelGermMale Man page
m Man page
newCCSParams Man page Source code
scTensor Man page
scTensor-package Man page
setParam Man page
setParam,CCSParams,ANY-method Man page
setParam,CCSParams-method Man page
setParam<- Man page
setParam<-,CCSParams,ANY-method Man page
setParam<-,CCSParams-method Man page
tsneGermMale Man page
v Man page
rikenbit/scTensor documentation built on Dec. 16, 2021, 5:51 p.m.