cellCellSimulate: Parameter Simulate for scTensor

In rikenbit/scTensor: Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition

Parameter Simulate for scTensor

Description

All parameters is saved to metadata slot of SingleCellExperiment object.

Usage

cellCellSimulate(params = newCCSParams(), verbose = TRUE)

Arguments

params	A parameter object generated by newCCSParams().
verbose	Whether the message is outputted or not (Default: TRUE).

Value

A list object containing simcount, LR, and celltype. simcount is the synthetic count matrix, LR is the synthetic ligand-receptor pair list, and celltype is the vector to specity the celltype of the each column of simcount.

Author(s)

Koki Tsuyuzaki

Examples

showMethods("cellCellSimulate")

rikenbit/scTensor documentation built on Jan. 28, 2023, noon