GermMale: The matrix which is used as test data of scTensor.

In rikenbit/scTensor: Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition

The matrix which is used as test data of scTensor.

Description

A matrix with 242 rows (genes) * 852 columns (cells).

Usage

data(GermMale)

Details

The data matrix is downloaded from GEO Series GSE86146 (https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE86146&format=file). Only male data is extracted and then the gene symbol is converted to NCBI Gene ID by Homo.sapiens package.

For saving the package size, the number of genes are strictlly reduced by the standard of highlly variable genes with threshold of p-value is 1E-300.

References

Li L. and Dong J. and Yan L. and Yong J. et al. (2017) Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal Niche Interactions. Cell Stem Cell, 20(6): 858-873

See Also

labelGermMale, tsneGermMale.

Examples

data(GermMale)

rikenbit/scTensor documentation built on Jan. 28, 2023, noon