NCC: NCC
In ritianjiang/RTFE: RiTian's Features Extractor
Description
Usage
Arguments
Details
Value
Description
The output is sorted by A/C/G/T at each posotions. For example, if you run
NCC(xxx,"DNA",2), then you'll get a vector which is sorted according to AA,AC,AG,AT...
TA,TC,TG,TT.
Usage
1
NCC(Seq, seqType, n)
Arguments
Seq
A character string which denotes the DNA/RNA sequence
seqType
The sequence is DNA or RNA. It should be either 'DNA' or 'RNA'
n
The k of k-mer
Details
The function implement the basic DNA/RNA Sequence nucleotide composition counting.
Value
A vector contains the compositions
ritianjiang/RTFE documentation built on Aug. 8, 2020, 7:48 p.m.
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Description Usage Arguments Details Value
Description
The output is sorted by A/C/G/T at each posotions. For example, if you run NCC(xxx,"DNA",2), then you'll get a vector which is sorted according to AA,AC,AG,AT... TA,TC,TG,TT.
Usage
1 | NCC(Seq, seqType, n)
|
Arguments
Seq |
A character string which denotes the DNA/RNA sequence |
seqType |
The sequence is DNA or RNA. It should be either 'DNA' or 'RNA' |
n |
The k of k-mer |
Details
The function implement the basic DNA/RNA Sequence nucleotide composition counting.
Value
A vector contains the compositions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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