getT2PseKNC: getT2PseKNC

In ritianjiang/RTFE: RiTian's Features Extractor

Description

Please make sure the sequence type of your data. The default file is 6 features of double-strand B-DNA

Usage

getT2PseKNC(object, phychem_file = NULL, normalization = T,
  lambda = 4)

Arguments

object	A Benneat object
phychem_file	A matrix;whose rownames are features and colnames are 2-mer
normalization	Bool, if TRUE, the function will perform normalization. default:T
lambda	numeric. The max number of sequence tiers. default:4

Value

A matrix contains ALL sequences' moditified T2PseKNC features,each row denotes a sequence. The Sequence is sorted by its order in Benneat object. The return value only contains the long-range part of T2PSeKNC. The detailed explanation can be find in Hao Lin Groups' paper iTerm-PseKNC. This function only implement the 2-mer situations. The ncol of result will be as lambda*(phechem_file feature nums)-length

ritianjiang/RTFE documentation built on Aug. 8, 2020, 7:48 p.m.