Files in rivas-lab/snpnet
snpnet: Efficient Lasso Solver for Large SNP Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/CI.Rsq.R
R/coxgrad.R
R/eval.R
R/fileIO.R
R/functions.R
R/helpers.R
R/old.functions.R
R/plot.R
R/refitting.R
R/snpnet.R
README.md
docker/Dockerfile
docker/README.md
helpers/export_betas.R
helpers/export_intermediate_results.sh
helpers/snpnet_misc.R
helpers/snpnet_misc.sh
helpers/snpnet_wrapper.R
helpers/snpnet_wrapper.sh
inst/extdata/README.md
inst/extdata/sample.pgen
inst/extdata/sample.phe
inst/extdata/sample.psam
inst/extdata/sample.pvar.zst
inst/extdata/vars.rds
man/FID_IID_from_rownames.Rd
man/FID_IID_to_rownames.Rd
man/cat_or_zcat.Rd
man/compose_regression_formula_str.Rd
man/compute_matrix_product.Rd
man/config_params_data_type.Rd
man/count_n_per_split.Rd
man/eval_AUC_CI.Rd
man/eval_CI.Rd
man/eval_r2_CI.Rd
man/fit_glm.Rd
man/fit_glm_across_splits.Rd
man/fit_to_df.Rd
man/get_ID_ALTs.Rd
man/glm_fit_to_r2.Rd
man/parse_covariates.Rd
man/plot_PRS_binomial.Rd
man/plot_PRS_vs_phe.Rd
man/predict_snpnet.Rd
man/readPheMaster.Rd
man/read_config_from_file.Rd
man/read_lambda_sequence_from_RData_file.Rd
man/read_phenotype_file.Rd
man/read_sscore_file.Rd
man/recode_pheno_values.Rd
man/save_BETA.Rd
man/snpnet.Rd
man/snpnet_fit_to_df.Rd
man/split_list_str.Rd
man/split_named_list_str.Rd
man/update_split_column_for_refit.Rd
vignettes/vignette.Rmd
vignettes/vignette.html
vignettes/vignette.pdf
