Files in rivasiker/phasty
General-purpose phase-type functions

.DS_Store
.Rbuildignore
._phasty.Rproj
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/._.DS_Store
R/ApproximateCharFun.R R/BlockCountingProcess.R R/DPH.R R/DPH_construction.R R/DPH_functions.R R/MDPH.R R/MDPH_functions.R R/MPH.R R/MPH_functions.R R/PH.R R/PH_functions.R R/check_phase_type.R R/convph.R R/generator_functions.R R/mean.R R/phase_type.R R/phase_type_to_network.R R/reward_phase_type.R R/simul.R R/summary.R R/var.R README.md
_pkgdown.yml
docs/._index.html
docs/404.html
docs/articles/Phasty.html
docs/articles/Phasty_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/Phasty_files/anchor-sections-1.0/anchor-sections.css
docs/articles/Phasty_files/anchor-sections-1.0/anchor-sections.js
docs/articles/Phasty_files/figure-html/plot_cont-1.png
docs/articles/Phasty_files/figure-html/plot_cont-2.png
docs/articles/Phasty_files/figure-html/plot_cont_2-1.png
docs/articles/Phasty_files/figure-html/plot_disc-1.png
docs/articles/Phasty_files/figure-html/plot_disc-2.png
docs/articles/Phasty_files/figure-html/plot_disc_2-1.png
docs/articles/Phasty_files/figure-html/plot_disc_quant-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-10-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-11-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-12-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-13-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-14-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-15-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-18-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-2-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-4-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-5-2.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-5-3.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-8-2.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-8-3.png
docs/articles/Phasty_files/figure-html/unnamed-chunk-9-1.png
docs/articles/Phasty_files/header-attrs-2.5/header-attrs.js
docs/articles/Population_genetics.html
docs/articles/Populations_genetics.html
docs/articles/index.html
docs/articles/old_vignettes/pop_gen_iker-Copie.html
docs/articles/old_vignettes/pop_gen_iker-Copie_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/old_vignettes/pop_gen_iker-Copie_files/anchor-sections-1.0/anchor-sections.css
docs/articles/old_vignettes/pop_gen_iker-Copie_files/anchor-sections-1.0/anchor-sections.js
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-11-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-12-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-14-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-15-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-17-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-18-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-20-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-21-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-22-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-37-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-38-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-40-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-41-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-43-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-44-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-46-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-47-1.png
docs/articles/old_vignettes/pop_gen_iker-Copie_files/header-attrs-2.5/header-attrs.js
docs/articles/phasty_SFS.html
docs/articles/phasty_SFS_Figures.html
docs/articles/phasty_SFS_Figures_files/anchor-sections-1.0/anchor-sections.css
docs/articles/phasty_SFS_Figures_files/anchor-sections-1.0/anchor-sections.js
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-10-1.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-11-1.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-15-1.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-16-1.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-19-1.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-20-1.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-21-1.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-21-2.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-21-3.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-22-1.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-22-2.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-22-3.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-3-1.png
docs/articles/phasty_SFS_Figures_files/figure-html/unnamed-chunk-4-1.png
docs/articles/phasty_SFS_Figures_files/header-attrs-2.5/header-attrs.js
docs/articles/phasty_SFS_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/phasty_SFS_files/anchor-sections-1.0/anchor-sections.css
docs/articles/phasty_SFS_files/anchor-sections-1.0/anchor-sections.js
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-10-1.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-11-1.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-12-1.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-13-1.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-13-2.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-14-1.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-14-2.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-3-1.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-5-1.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-8-1.png
docs/articles/phasty_SFS_files/figure-html/unnamed-chunk-9-1.png
docs/articles/phasty_SFS_files/header-attrs-2.5/header-attrs.js
docs/articles/pic/cont_ggplot.jpg
docs/articles/pic/cont_quantile_ggplot.jpg
docs/articles/pic/disc_ggplot.jpg
docs/articles/pic/disc_quantile_ggplot.jpg
docs/articles/pic/reward_cont_ggplot.jpg
docs/articles/pic/reward_disc_ggplot.jpg
docs/articles/pop_gen_iker-Copie.html
docs/articles/pop_gen_iker-Copie_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-11-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-12-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-14-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-15-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-17-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-18-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-20-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-21-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-22-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-37-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-38-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-40-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-41-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-43-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-44-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-46-1.png
docs/articles/pop_gen_iker-Copie_files/figure-html/unnamed-chunk-47-1.png
docs/articles/pop_gen_iker.html
docs/articles/pop_gen_iker_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/pop_gen_iker_files/anchor-sections-1.0/anchor-sections.css
docs/articles/pop_gen_iker_files/anchor-sections-1.0/anchor-sections.js
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-13-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-14-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-15-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-16-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-17-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-19-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-20-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-22-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-23-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-34-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-36-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-38-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-39-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-40-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-41-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-42-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-44-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-45-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-47-1.png
docs/articles/pop_gen_iker_files/figure-html/unnamed-chunk-48-1.png
docs/articles/pop_gen_iker_files/header-attrs-2.5/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ApproxCDF-1.png
docs/reference/ApproxCDF-2.png
docs/reference/ApproxCDF.html
docs/reference/DPH_functions.html
docs/reference/DPHrep.html
docs/reference/MDPH_functions.html
docs/reference/MPH_functions.html
docs/reference/PH_functions.html
docs/reference/Phase-type-1.png
docs/reference/Phase-type-2.png
docs/reference/Phase-type.html
docs/reference/RateMAndStateSpace.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/block_counting_process.html
docs/reference/convph.html
docs/reference/dphtype-1.png
docs/reference/dphtype-2.png
docs/reference/dphtype.html
docs/reference/generator_functions.html
docs/reference/index.html
docs/reference/mean.html
docs/reference/moment_mph.html
docs/reference/phase_type.html
docs/reference/phase_type_to_network.html
docs/reference/reward_phase_type.html
docs/reference/sim_phase_type.html
docs/reference/sim_rew_phase_type.html
docs/reference/simple_smoothe.html
docs/reference/var.html
man/ApproxCDF.Rd man/DPH_functions.Rd man/DPHrep.Rd man/MDPH_functions.Rd man/MPH_functions.Rd man/PH_functions.Rd man/RateMAndStateSpace.Rd man/block_counting_process.Rd man/convph.Rd man/generator_functions.Rd man/mean.Rd man/moment_mph.Rd man/phase_type.Rd man/phase_type_to_network.Rd man/reward_phase_type.Rd man/sim_phase_type.Rd man/sim_rew_phase_type.Rd man/simple_smoothe.Rd man/var.Rd
phasty.Rproj
tests/testthat.R tests/testthat/test-DPH.R tests/testthat/test-MPH.R tests/testthat/test-PH.R tests/testthat/test-cont_reward.R tests/testthat/test-disc_reward.R
vignettes/.build.timestamp
vignettes/.gitignore
vignettes/Phasty.Rmd
vignettes/for_vignette.bib
vignettes/phasty_SFS.Rmd vignettes/phasty_SFS_Figures.Rmd vignettes/phasty_SFS_Figures.knit.md
vignettes/phasty_SFS_Figures_files/anchor-sections-1.0/anchor-sections.css
vignettes/phasty_SFS_Figures_files/anchor-sections-1.0/anchor-sections.js
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/bootstrap-theme.css
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/bootstrap.css
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/bootstrap.css.map
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/bootstrap.min.css
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/cerulean.min.css
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/cosmo.min.css
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/darkly.min.css
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/flatly.min.css
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/Lato.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
vignettes/phasty_SFS_Figures_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-10-1.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-11-1.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-15-1.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-16-1.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-19-1.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-20-1.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-21-1.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-21-2.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-21-3.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-22-1.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-22-2.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-22-3.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-3-1.png
vignettes/phasty_SFS_Figures_files/figure-html/unnamed-chunk-4-1.png
vignettes/phasty_SFS_Figures_files/header-attrs-2.5/header-attrs.js
vignettes/phasty_SFS_Figures_files/highlightjs-9.12.0/default.css
vignettes/phasty_SFS_Figures_files/highlightjs-9.12.0/highlight.js
vignettes/phasty_SFS_Figures_files/highlightjs-9.12.0/textmate.css
vignettes/phasty_SFS_Figures_files/jquery-1.11.3/jquery.min.js
vignettes/phasty_SFS_Figures_files/navigation-1.1/codefolding.js
vignettes/phasty_SFS_Figures_files/navigation-1.1/sourceembed.js
vignettes/phasty_SFS_Figures_files/navigation-1.1/tabsets.js
vignettes/pic/cont_ggplot.jpg
vignettes/pic/cont_quantile_ggplot.jpg
vignettes/pic/disc_ggplot.jpg
vignettes/pic/disc_quantile_ggplot.jpg
vignettes/pic/genetics_cdf_mrca_total.jpg
vignettes/pic/genetics_pdf_mrca_total.jpg
vignettes/pic/genetics_quantile_mrca_total.jpg
vignettes/pic/reward_cont_ggplot.jpg
vignettes/pic/reward_disc_ggplot.jpg
vignettes/pop_gen_iker.Rmd
vignettes/preamble-mathjax.tex
rivasiker/phasty documentation built on June 15, 2021, 9:18 p.m.