report: report

In rkimoakbioinformatics/roakvar: Genomic Variant Analysis Platform

report

Description

Generate reports from a job

Usage

report(
  dbpath = NULL,
  reports = list(),
  filterpath = NULL,
  filter = NULL,
  filtersql = NULL,
  filtername = NULL,
  filterstring = NULL,
  savepath = NULL,
  confpath = NULL,
  module_name = NULL,
  nogenelevelonvariantlevel = FALSE,
  confs = "{}",
  inputfiles = NULL,
  separatesample = FALSE,
  output_dir = NULL,
  do_not_change_status = FALSE,
  quiet = TRUE,
  system_option = NULL,
  module_option = NULL,
  concise_report = FALSE,
  includesample = NULL,
  excludesample = NULL,
  package = NULL,
  md = NULL,
  level = NULL
)

Value

A string, a named list, or a dataframe. Output of reporters

Examples

# Generate a CSV-format report file from the job result file example.sqlite
#roakvar::report(dbpath="example.sqlite", reports="csv")

rkimoakbioinformatics/roakvar documentation built on July 27, 2022, 7:27 p.m.