util.test: util.test

In rkimoakbioinformatics/roakvar: Genomic Variant Analysis Platform

util.test

Description

Test modules

Usage

util.test(
  rundir = NULL,
  modules = NULL,
  mod_types = NULL,
  to = "return",
  quiet = TRUE
)

Value

A named list. Field result is a named list showing the test result for each module. Fields num_passed and num_failed show the number of passed and failed modules.

Examples

# Test the ClinVar module
#roakvar::util.test(modules="clinvar")
# Test the ClinVar and the COSMIC modules
#roakvar::util.test(modules=list("clinvar", "cosmic"))

rkimoakbioinformatics/roakvar documentation built on July 27, 2022, 7:27 p.m.