util.filtersqlite: util.filtersqlite

In rkimoakbioinformatics/roakvar: Genomic Variant Analysis Platform

util.filtersqlite

Description

util.filtersqlite

Usage

util.filtersqlite(
  paths = NULL,
  out = ".",
  suffix = "filtered",
  filterpath = NULL,
  filtersql = NULL,
  includesample = NULL,
  excludesample = NULL
)

Value

A boolean. TRUE if successful, FALSE if not

Examples

# Filter an analysis result file with an SQL filter set
#roakvar::util.filtersqlite(paths="example.sqlite", 
#  filtersql='base__so=="MIS" and gnomad__af>0.01')
# Filter two analysis result files with a filter definition file
#roakvar::util.filtersqlite(paths=list("example1.sqlite", 
#  "example2.sqlite"), filterpath="filter.json")

rkimoakbioinformatics/roakvar documentation built on July 27, 2022, 7:27 p.m.