convertKeyrunObsBMtoMSSPM: Keyrun to MSSPM Biomass Conversion

In rklasky/rPackages: MSSPM Data Conversion Package

Description

Conversion of Keyrun Survey Index file to MSSPM Observed Biomass csv file

Usage

convertKeyrunObsBMtoMSSPM(
  speciesMappingDataFrame,
  observedBMDataFrame,
  surveySeason,
  outputFile
)

Arguments

speciesMappingDataFrame	The data frame that contains a mapping of the SVSPP numeric values to corresponding species names (i.e., modelName)
observedBMDataFrame	The input survey index (i.e. biomass) data frame
surveySeason	The survey season data to convert (valid options are currently FALL or SPRING)
outputfile	The output csv data file containing the MSSPM observed biomass formatted data. N.B. The csv file must begin with "Biomass".

Value

n/a

Examples

remotes::install_github("NOAA-EDAB/ms-keyrun")

speciesMappingDataFrame <- mskeyrun::focalSpecies # needed to map SVSPP value to modelName
observedBMDataFrame <- mskeyrun::surveyIndexA4
surveySeason <- 'SPRING' # Use 'FALL' or "SPRING"
outputFile <- paste('/home/rklasky/test/BiomassAbsolute_',surveySeason,'.csv',sep="")

convertKeyrunObsBMtoMSSPM(speciesMappingDataFrame,observedBMDataFrame,surveySeason,outputFile)

rklasky/rPackages documentation built on Feb. 9, 2022, 1:10 a.m.