R/Hapi-package.R

In rli012/Hapi: Inference of Chromosome-length Haplotypes using Genomic Data of Single Gamete Cells

#' Hapi is a novel easy-to-use package that only requires 3 to 5 gametes 
#' to reconstruct accurate and high-resolution haplotypes of an individual. 
#' The gamete genotype data may be generated from various platforms including 
#' genotyping arrays and next generation sequencing even with low-coverage. 
#' Hapi simply takes genotype data of known hetSNPs in single gamete cells 
#' as input and report the high-resolution haplotypes as well as confidence 
#' level of each phased hetSNPs. The package also includes a module allowing 
#' downstream analyses and visualization of crossovers in the gametes.
#'
#' @name Hapi-package
#' @aliases Hapi-package Hapi
#' @docType package
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#' Raw genotyping data
#' @name gmt
#' @docType data
#' @keywords datasets
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#' Chromosome information of hg19
#' @name hg19
#' @docType data
#' @keywords datasets
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#' Haplotypes of a single gamete cell for visualization
#' @name gamete11
#' @docType data
#' @keywords datasets
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#' Crossover information across all gamete cells
#' @name crossover
#' @docType data
#' @keywords datasets
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