count_normalization: RNA-seq reads normalization using size factor
In rmauntz/Larson_cfRNA_DarkChannelBiomarkers: A comprehensive characterization of the cell-free transcriptome reveals tissue- and subtype-specific biomarkers for cancer detection
Description
Usage
Arguments
Value
Description
The definition of size factor is in this paper:
https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-10-r106
Usage
1
count_normalization(count_raw, sample_anno)
Arguments
count_raw
: The numeric matrix of raw reads count.
sample_anno
: The metadata of the samples.
Value
The normalized reads count matrix.
rmauntz/Larson_cfRNA_DarkChannelBiomarkers documentation built on Jan. 30, 2021, 12:47 a.m.
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Description Usage Arguments Value
Description
The definition of size factor is in this paper: https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-10-r106
Usage
1 | count_normalization(count_raw, sample_anno)
|
Arguments
count_raw |
: The numeric matrix of raw reads count. |
sample_anno |
: The metadata of the samples. |
Value
The normalized reads count matrix.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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