edger_two_group_de_te: Find differentiated expressed genes in two classes of RNA-seq...
In rmauntz/Larson_cfRNA_DarkChannelBiomarkers: A comprehensive characterization of the cell-free transcriptome reveals tissue- and subtype-specific biomarkers for cancer detection
Description
Usage
Arguments
Value
Description
Takes in a vector of control / housekeeping genes to use for expression
analysis of a targeted RNA panel. edgeR normalization assumes that most of
the genes are not differentially expressed, which might not be true in a
targeted panel (https://support.bioconductor.org/p/87121/).
Usage
1
edger_two_group_de_te(genetable, labels, controls, method = "TMMwsp")
Arguments
genetable
a data_frame with columns gene_id and columns corresponding
to the numeric value of RNA counts per gene in a sample.
labels
a vector of length ncol(genetable)-1, corresponding to the sample groups
controls
vector of genes that you expect to have consistent expression between groups
method
character, normalization method used by edgeR
Value
data frame with differential p-values for each gene
rmauntz/Larson_cfRNA_DarkChannelBiomarkers documentation built on Jan. 30, 2021, 12:47 a.m.
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Description Usage Arguments Value
Description
Takes in a vector of control / housekeeping genes to use for expression analysis of a targeted RNA panel. edgeR normalization assumes that most of the genes are not differentially expressed, which might not be true in a targeted panel (https://support.bioconductor.org/p/87121/).
Usage
1 | edger_two_group_de_te(genetable, labels, controls, method = "TMMwsp")
|
Arguments
genetable |
a data_frame with columns gene_id and columns corresponding to the numeric value of RNA counts per gene in a sample. |
labels |
a vector of length ncol(genetable)-1, corresponding to the sample groups |
controls |
vector of genes that you expect to have consistent expression between groups |
method |
character, normalization method used by edgeR |
Value
data frame with differential p-values for each gene
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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