collectTrioScores: Collect all the scores for possible parents for an offspring.

In rmsharp/parentfindr: What the Package Does (One Line, Title Case)

Description

This takes a single offspring and a list of potential dams and a list of potential dams and calculates the number of loci with alleles missingLoci for each sire and dam, the number of invalidLoci loci for the offspring. Note: invalidLoci loci for the offspring are defined the same as missingLoci loci for potential parents; they are loci with no observed alleles.

Usage

collectTrioScores(kidId, damIds, sireIds, animalAlleles)

Arguments

kidId	Character vector with the refId of the offspring.
damIds	Character vector of refId values corresponding to possible dams for the offspring.
sireIds	Character vector of refId values corresponding to possible sires for the offspring.
animalAlleles	List with all allele information for all animals.

rmsharp/parentfindr documentation built on Nov. 29, 2020, 4:33 a.m.