getParentfindrConfig: Get parentfindr configuration

In rmsharp/parentfindr: What the Package Does (One Line, Title Case)

Description

Get parentfindr configuration

Usage

getParentfindrConfig(expectConfigFile = TRUE)

Arguments

expectConfigFile

logical parameter when set to FALSE, no configuration is looked for. Default value is TRUE.

Value

A list of configuration settings used by the application.

Currently this returns the following character strings in a named list.

1. minNumbergetParamDef(tokenList, "minNumber"),

2. maxDiscrepantgetParamDef(tokenList, "maxDiscrepant"),

3. thMissinggetParamDef(tokenList, "thMissing"),

4. thDiscrepantgetParamDef(tokenList, "thDiscrepant"),

5. microsatellitesgetParamDef(tokenList, "microsatellites"),

6. siresFirstgetParamDef(tokenList, "siresFirst"),

7. selectionTypeFewestDiscrepant getParamDef(tokenList, "selectionTypeFewestDiscrepant"),

8. nAllelesgetParamDef(tokenList, "nAlleles"),

9. dateTypegetParamDef(tokenList, "dateType"),

10. firstParentTypegetParamDef(tokenList, "firstParentType"),

11. alleleFilegetParamDef(tokenList, "alleleFile"),

12. triosFilegetParamDef(tokenList, "triosFile"),

13. sysname sysInfo["nAlleles"],

14. releasesysInfo["release"],

15. version sysInfo["version"],

16. nodenamesysInfo["nodename"],

17. machinesysInfo["machine"],

18. loginsysInfo["login"],

19. usersysInfo["user"],

20. effective_usersysInfo["effective_user"],

21. homeDirconfig["homeDir"],

22. configFileconfig["configFile"])

Examples

library(parentfindr)
getParentfindrConfig()

rmsharp/parentfindr documentation built on Nov. 29, 2020, 4:33 a.m.