make_excel_wkbk: Form an Excel workbook and worksheet similar in format to...

In rmsharp/snprcspf: SNPRC SPF Colony Screening Data Software Tool Package

Description

The Excel file “Report plate 62 08-15-2014.xlsx” was used as a guide.

Usage

make_excel_wkbk(
  file,
  w_raw_mfi_df,
  w_mfi_df,
  w_d_mfi_df,
  w_r_mfi_df,
  w_combined_df,
  low_positive_controls_df
)

Arguments

file	character vector of length one with name of file to create
w_raw_mfi_df	dataframe with raw results from Luminex machine
w_mfi_df	dataframe with background substracted from raw results
w_d_mfi_df	dataframe with normalized values where divisors were used on background subtracted results
w_r_mfi_df	dataframe where each antigen result is called as N, I, or P based on is values relative to a fraction of the low control value.
w_combined_df	dataframe with the antigen calls combined into agent (virus) calls. (See get_combined() for algorithm).
low_positive_controls_df	dataframe with sample, name, wells, and val columns that identify the well with low positive control values (<5000 for Human or Goat IgG).

rmsharp/snprcspf documentation built on June 15, 2020, 11:21 a.m.