API for rmsharp/snprcspf
SNPRC SPF Colony Screening Data Software Tool Package

Global functions
add_id_date_repeated Man page Source code
add_sqlmed_codes Man page Source code
apply_divisor Man page Source code
combine_lines Man page Source code
create_luminex_screen_results_tbl Man page Source code
create_pdl_results_tbl Man page Source code
create_spf_samples_tbl Man page Source code
divisors_match Man page Source code
fix_pdl_csv_columns Man page Source code
format_luminex_results Man page Source code
getRunPropertyValue Man page Source code
getTransformedOutputFile Man page Source code
get_Machine_info Man page Source code
get_agents_and_antigen_pairs Man page Source code
get_all_combined Man page Source code
get_all_df Man page Source code
get_all_files Man page Source code
get_all_regions Man page Source code
get_all_summary_df Man page Source code
get_antigen_pairs Man page Source code
get_assay_pairs Man page Source code
get_bad_date_ids_and_id_ids Man page Source code
get_bead_df Man page Source code
get_bead_headers Man page Source code
get_col_boundaries Man page Source code
get_col_names Man page Source code
get_combined Man page Source code
get_date_from_sample Man page Source code
get_divisor_mismatch Man page Source code
get_divisors Man page Source code
get_empty_pdl_df Man page Source code
get_excel_divisors Man page Source code
get_file_ids Man page Source code
get_followup Man page Source code
get_followup_pool_samples Man page Source code
get_id_date_repeated Man page Source code
get_id_from_sample Man page Source code
get_low_positive_controls Man page Source code
get_luminex_species Man page Source code
get_mean_raw_mfi Man page Source code
get_mean_raw_mfi_from_lxd Man page Source code
get_mean_raw_mfi_from_xlsx Man page Source code
get_melted_bead_2_wide Man page Source code
get_most_recent_file Man page Source code
get_most_recent_files Man page Source code
get_one_record_df Man page Source code
get_pdl_csv_data Man page Source code
get_pdl_meta_data_from_content Man page Source code
get_pdl_nonnegative_reports Man page Source code
get_pdl_report_date Man page Source code
get_pdl_report_file_name Man page Source code
get_pdl_reports Man page Source code
get_pdl_results Man page Source code
get_pdl_results_test_comment Man page Source code
get_plateID Man page Source code
get_pooled_sample_df Man page Source code
get_positive_antigens Man page Source code
get_possible_ids_dates Man page Source code
get_raw_mfi Man page Source code
get_raw_mfi_df Man page Source code
get_raw_mfi_tables Man page Source code
get_region_df Man page Source code
get_repeated_from_sample Man page Source code
get_report_date_from_filename Man page Source code
get_result_tables Man page Source code
get_sample_df Man page Source code
get_sample_type_trans Man page Source code
get_session_date_tm Man page Source code
get_setup_name Man page Source code
get_snprc_id Man page Source code
get_start_end_dates Man page Source code
get_still_pos Man page Source code
get_summary_df Man page Source code
get_test_antigens Man page Source code
get_usable_files Man page Source code
get_wide_df Man page Source code
get_workset_desc Man page Source code
get_yyyymmdd_from_possible_dates Man page Source code
handleErrorsAndWarnings Man page Source code
insert_combined_assay_results Man page Source code
insert_missing_lines Man page Source code
insert_pdl_results Man page Source code
insert_spf_samples Man page Source code
is_column_labels Man page Source code
luminex_agent_to_sqlmed_test_id Man page Source code
luminex_agent_to_sqlmed_test_name Man page Source code
luminex_to_sqlmed_procedure_id Man page Source code
luminex_to_sqlmed_procedure_name Man page Source code
make_excel_wkbk Man page Source code
mdy_to_yyyymmdd Man page Source code
merge_pooled_and_pdl Man page Source code
na_to_char Man page Source code
pdl_assay_to_sqlmed_procedure_id Man page Source code
pdl_assay_to_sqlmed_procedure_name Man page Source code
pdl_assay_to_sqlmed_test_id Man page Source code
pdl_assay_to_sqlmed_test_name Man page Source code
pdl_report_to_df Man page Source code
pdl_reports_to_df Man page Source code
pooled_Y_or_N Man page Source code
pooled_bleed_date_to_sample_date Man page Source code
print_bad_animal_ids Man page Source code
print_bad_sample_dates Man page Source code
readRunPropertiesFile Man page Source code
read_sample_file Man page Source code
remove_bad_animal_ids Man page Source code
remove_bn_and_dash_R Man page Source code
remove_pdl_report_headers Man page Source code
replace_bad_csv_files Man page Source code
report_missing_samples Man page Source code
report_unexpected_samples Man page Source code
save_excel_sheet Man page Source code
setMaxSeverity Man page Source code
sort_occurances Man page Source code
spf_odbcConnect Man page Source code
strip_column_labels Man page Source code
subtract_background Man page Source code
test_for_bleed_date Man page Source code
test_for_cage Man page Source code
test_for_snprc_id Man page Source code
test_for_yes_no Man page Source code
triggerError Man page Source code
triggerWarning Man page Source code
rmsharp/snprcspf documentation built on Nov. 18, 2017, 8:19 p.m.